Former Members

Vienna :: since 2005

Franziska Reden
Master Student, Student researcher
Jun. 2022-Jul. 2023-Jan. 2024
EvoNAPS: a database für natural parameter settings of evolutionary models (Master thesis)
Sebastian Burgstaller-Muehlbacher
Post-Doc
Jan. 2015-Nov. 2023
Clement Bader
Master Student
Apr. 2019-Jul. 2023
TreeShredder: a program for phylogenetic analysis of large sets of trees based on splits (Master thesis)
Manfred Kaiser
Master Student
Oct. 2021-Mar. 2023
Simulated single cell RNA sequencing data along developmental trajectories (Master thesis)
Nils Gubela
Master Student
Mar 2022-Nov. 2022
A test for reversibility of Markov chains in molecular evolution (Master thesis)
Carme Vinas Ferrando
Master student
Jun 2022-Sep. 2022
Implementation of a test for branch saturation in a phylogenetic tree (Master thesis)
Enes Berk Sakalli
Master Student
Apr. 2021-Sep. 2022
Sequential animation of phylogenetic trees (Master thesis)
Tamara Drucks
Master student
Feb. 2018-Jun. 2022
Representation learning for variable-sized multiple sequence alignments (Master thesis)
Antón Vega Mendez
Erasmus student
Jan. 2022-Jun. 2022
Inês Ferreira
PhD student
May 2018-Mar. 2022
In-silico antimicrobial resistance diagnostics (PhD thesis)
Veronika Bošková
Post-Doc
Jan. 2019-Mar 2022
Natasa Cirovic
Master student
Jul 2021-Mar. 2022
Effects of antiretroviral therapy on HIV evolution (Master thesis)
Dominic Földvári
PhD student
Oct. 2020-Mar. 2022
Magdalena Ebinger
Master Student
Aug. 2020-Mar. 2022
MADE workflow: micro-RNA assignment and detection of editing (MADE) workflow (Master thesis)
Celine Prakash
PhD student, Post-Doc, Guest Researcher
Nov. 2012-Dec. 2021
Enumerative combinatorics models for fragmentation patterns in RNA sequencing provides insights into the expected coverage profile (PhD thesis)
Olga Chernomor
PhD Student, Post-Doc
Oct. 2011-Nov. 2021
Phylogenomics: theory, algorithms and applications (PhD thesis)
Egor Kiselev
Post-Doc
Mar. 2021-Oct. 2021
Florian Pflug
PhD Student, Post-Doc
July 2015-Oct. 2021
Correctly counting molecules using unique molecular identifiers (PhD thesis)
Silvia Madritsch
PhD Student
Mar. 2018-Feb. 2021
Comparative transcriptomics of non-model plant organisms (PhD thesis)
Tatsiana Hofer
(Master student), PhD Student
Jan. 2018-Oct. 2020
Stitching microscopic images from cell samples (Master thesis)
Dominik Schrempf
Guest researcher
Jan. 2018-Aug. 2020
Stephen Crotty
Post-Doc
Sep. 2016-Aug. 2019
Chan Dat Dennis Huyen
Master Student
Oct. 2018-Jul. 2019
Nuclei segmentation in fluorescence images using deep learning (Master thesis)
Lukasz Reszczynski
PhD Student
May 2018-May 2019
Luis Felipe Paulin Paz
PhD Student
Apr. 2014-Mar. 2019
Understanding the sampling properties of high throughput sequencing technologies (PhD thesis)
Milica Krunic
PhD Student, Post-Doc
Apr. 2011-Jan. 2019
NGS data analysis in resolving disease etiology (PhD thesis)
Miguel Gallach
Post-Doc
Jan. 2012-Dec. 2018
Benoit Schroeder
Master Student
Oct. 2017-Nov. 2018
Organoid CRISPR screen analysis pipeline (Master thesis)
Magdalena Ebinger
Bachelor Student
Apr. 2018-Sep. 2018
Using subsampling and supertrees for improving the reconstruction of large viral trees (Bachelor thesis)
Bui Quang Minh
PhD Student, Post-Doc
Jan. 2006-Jan. 2018
Computational methods in biodiversity conservation (PhD thesis)
Philipp Rescheneder
Master Student, PhD Student
2009-2017, 2022
OpenCL based sequence alignment algorithms, optimized for next generation sequencing data (Master thesis),
Fast, accurate and user-friendly alignment of short and long read data with high mismatch rates (PhD thesis)
Philip Stevens
PhD Student
2013-2017
Establishment of a quantitative score for liquid biopsy in sepsis diagnostics (PhD thesis)
Konstantina Kyriakouli
PhD Student
2013-2017
Diep Thi Hoang
PhD Student
2014-2017
Clement Bader
Bachelor Student
Apr. 2017-Sep. 2017
Optimizing IQ-Tree Settings for Little Data MSAs and Creating Trajectories Reconstructing Tree Space (Bachelor thesis)
Cassius Manuel Perez de los Cobos Hermosa
Master Student (ext)
Feb. 2016-Mar. 2017, 2017-2022
Mathematical topics in phylogenetics (Master Thesis),
Alternative evolutionary processes and measures of phylogenetic information (PhD Thesis)
Moritz Smolka
BSc. Student
2015-2017
Benchmarking and Optimization of Read Mapping Algorithms (Bachelor thesis)
Jana Trifinopoulos
Master Student
2015
Large-scale phylogenetic inference for simulated HIV epidemics (Master thesis)
Lam-Tung Nguyen
Diploma, PhD Student, Post-Doc
Sep. 2008-Aug. 2016
An Efficient Algorithm for Phylogeny Reconstruction by Maximum Likelihood (Diploma thesis),
Computational methods for fast and accurate phylogenetic inference (PhD thesis)
Tobias Kaiser
Post-Doc
Sep. 2014-Aug. 2016
Susanne Pfeifer
Post-Doc
Jan. 2013-Mar. 2015
Fritz Sedlazeck
PhD Student, Post-Doc
Sep. 2008-Dec. 2014
Benchtop sequencing on benchtop computers (PhD thesis)
Maurits Evers
Post-Doc
Sep. 2014-Feb. 2015
Christian Harlander
System Administrator
Mar. 2014-Feb. 2015
Haris Vikalo
Senior Scientist
Jul. 2014-Dec. 2014
Peter Venhuizen
Master Student
Jan. 2014-Sep. 2014
Niko Popitsch
Master student, Post-Doc
Jan. 2012-Aug. 2014
A novel compression approach for mapped high-throughput sequencing data set (Master thesis)
Alexander Zrim
Bachelor student
2013-Sep. 2014
On Crossing Minimization with Boltzmann Machines (Bachelor thesis)
Mikhail Okun
PhD Student
Dec. 2010-Apr. 2014
Molecular Phylogeny and Taxonomy of the Physarum notabile Species Complex (Myxomycetes) (PhD thesis)
Stefanie Tauber
PhD Student & Post-Doc
Jan. 2010-Mar. 2014
Exploring the transcriptome (PhD thesis)
Steven Müller
System Administrator
Mar. 2012-Feb. 2014
Manuel Gil
Post-Doc
Aug. 2012-Jul. 2013
Tina Köstler
PhD Student
Nov. 2008-Apr. 2012
Domains, Proteins, and Evolution (PhD thesis)
Wolfgang Fischl
System Administrator, Bachelor student
2008-Mar. 2013
A Substitution Model for the English Language (Bachelor thesis)
Dinh Quang Huy
PhD Student
Mar. 2008-Dec. 2012
Bioinformatic tools for analyzing epigenomic profiling data (PhD thesis)
Dennis Haake
Bachelor Student
Jul. 2012-Aug. 2012
Profile Hidden Markov Model based Search for Orthologs of Nucleoporins in Tardigrades (Bachelor thesis)
Ingo Ebersberger
Post-Doc
Jan. 2006-Jun. 2012
Jovana Nolic
Secretary
Jan. 2009-Mar. 2012
Peter Schmitzberger
Master Student
Jul. 2010-Sep. 2012
A phylogenetic pipeline for prediction of orthologous genes (Master thesis)
Tobias Neumann
Master Student, PhD Student (ext)
Jul. 2010-Sep. 2012, 2023
Challenges of de-novo assembling the transcriptome of Idiosepius pygmaeus for novel gene identification (Master thesis)
Recovery, quantification and error correction of nucleotide conversions in epitranscriptomics sequencing datasets (PhD thesis)
Mareike Fischer
Post-Doc
May 2009-Mar. 2012
Nguyen Thi Minh Anh
PhD Student & Post-Doc
Jan. 2006-Feb. 2012
Goodness of fit and robustness of phylogenetic methods in the light of intermittent evolution (PhD thesis)
Natasa Peric
Secretary
Jan. 2006-Jul. 2011
Tanja Gesell
PhD Student & Post-Doc
May 2005-Nov. 2011
A phylogenetic definition of structure (PhD thesis)
Rikard Erlandsson
Senior Scientist
Sep. 2010-Feb. 2011
Sascha Strauss
PhD Student
Jan. 2006-Sep. 2010
Addressing biological questions with massive sequence data (PhD thesis)
Ricardo de Matos Simoes
PhD Student
May 2005-Sep. 2010
Species-specific evolving regions in the human and chimpanzee genomes (PhD thesis)
Anne Kupczok
PhD Student
Nov. 2006-Sep. 2010
Postprocessing phylogenies (PhD thesis)
Pham Minh Phuong
Bachelor Student
Mar. 2008-Jun. 2010
Manuela Machatti
Master student
Sep. 2008-Dec. 2009
Phylogenetic Inference with Dependencies (Master thesis)
Greg Ewing
Post-Doc
Jul. 2006-Jun. 2009
Michael Sonntag
Bachelor student
Jul. 2009-Aug. 2009
Bioinformatics analysis of interacting amino acids at 2APro cleavage site of Human Rhinovirus polyprotein (Bachelor thesis)
Sascha Kastens
Bachelor student
Mar. 2009-Jul. 2009
Analyse der Migration von HIV zwischen Zentralafrikanischen Ländern (Bachelor thesis)
Martin Grabner
Post-Doc
Sep. 2005-Mar. 2009
Steffen Klaere
Post-Doc
May 2005-Oct. 2008
Martina Kutmon
Bachelor student
Mar. 2008-Dec. 2008
Detection of Recombination Events in DNA Sequences (Bachelor thesis)
Andrea Führer
PhD student
Jan. 2006-Dec. 2007
Maximum Likelihood Estimation of Gene Family Specific Duplication and Deletion Rates (PhD thesis)
Stephan Zanger
PhD student
Feb. 2006-Sep. 2007
Dao Vinh Khiem
Master student
May 2006-Jun. 2007
Sliding window models to infer complex evolutionary trees (Master thesis)
Thomas Wölfel
PhD student
May 2006-Sep. 2006
Matthias Dehmer
Post-Doc
Jul. 2006-Feb. 2007

Düsseldorf :: 2001-2005

Simone Linz
PhD student
Oct. 2004-Apr. 2008
Reticulation in Evolution (PhD thesis)
Jochen Kohl
PhD student
?-2008
Towards an efficient management of biological data (PhD thesis)
Dominic Mainz
PhD student
?-2008
Deep integration of the OWL ontology language into Ruby using metaprogramming (PhD thesis)
Michael Rosskopf
PhD student
Oct. 2003-Jun. 2007
Development and Applications of Neutral Models for Evolution of Gene Expression (PhD thesis)
Dimitri Pochnau
Bachelor student
Jan. 2007-Apr. 2007
Berechnung des Multiplen Alignments mittels des größten X2-Kriteriums (Bachelor thesis)
Indra Mainz
Bachelor student
Jul. 2006-Oct. 2006
Entwicklung einer Prototypontologie fü bioinformatische Werkzeuge (Bachelor thesis)
Sascha Strauss
Diploma Student
2005-Apr. 2006
Rechnerbasierter Ansatz zur exakten Positionsbestimmung von Regionen variierender Abstammung im menschlichen Genom (Diploma thesis)
Markus Junge
Diploma student
Sep. 2004-Jan. 2006
Phylogenetische Analyse der Metazoa anhand von ESTs (Diploma thesis)
Vinh Le Sy
PhD student
Jan. 2003-Sep. 2005
Phylogeny Reconstructions Come of Age (PhD thesis)
Sebastian Peslak
Bachelor student
Aug. 2005-Nov. 2005
Thomas Laubach
Bachelor student + Master student
Jan. 2007-Feb. 2009
Von Bilder zu Bämen ('From Images to Trees', Bachelor thesis)
Die Ableitung Maschinenlesbarer Darstellungen für phylogenetische Bäume aus Bilddaten ('Constructing Machine-Readable Representations from Phylogenetic Trees in Raster Images', Master thesis)
Katrin Zeiss
Bachelor student
Aug. 2005-Oct. 2005
A web based interface for secure data transfer (Bachelor thesis)
Stephan Zanger
Master student
2004-Aug. 2005
Vergleich von Suchprogrammen für RNA-Motive (Master thesis)
Jutta Buschbom
Post-Doc
Jul. 2003-Jun. 2005
Thomas Schlegel
PhD student
2003-Jun. 2007
Inferring Secondary Structure from RNA Alignments and their Trees (PhD thesis)
Achim Radtke
Post-Doc
Apr. 2002-Mar. 2005
Gunter Weiss
Juniorprofessor
Jan. 2002-Mar. 2005
Ricardo de Matos Simoes
Master Student
2004-Feb. 2005
Identifizierung artspezifischer Regionen im Mensch- und Schimpansengenom (Master thesis)
Dorit Liebers
Post-Doc
May 2000-Dec. 2003
Andrea Führer
Diploma student (ext)
2002-Sep. 2003
Eigenschaften des Quartett-Puzzling (Diploma thesis)
Ingo Paulsen
Diploma student, PhD student
2002-Aug. 2003, 2003-2007
Genbäume in Vertebraten (Diploma thesis),
Collaborative Knowledge Management in the Life Sciences Network (PhD thesis)

Leipzig :: 1998-2001

Roland Fleißner
PhD student
Jan. 1998-Sep. 2003
Sequence alignment and phylogenetic inference (PhD thesis)
Eckhart Petzold
Diploma student
Dec. 2002-Jun. 2003
Efficient Parameter Estimation for Maximum Likelihood Reconstruction of Phylogenetic Trees (Master thesis)
Thomas Schlegel
Diploma student
Sep. 2001-Mar. 2002
Sonja Meyer
PhD student
Jan. 1998-Feb. 2002
Estimation of site specific substitution rates (PhD thesis)
Martin Beck
Diploma student
Oct. 2001-Apr. 2002
Gunter Weiss
Post-Doc
Dec. 1997-Dec. 2001
Sebastian Zöllner
PhD student
Jan. 1998-Feb. 2001
Population-based Gene Mapping Using Linkage Disequilibrium (PhD thesis)
Gangolf Jobb
PhD student
May 2000-Jan. 2001
Dorit Liebers
Post-Doc
May 2000-Dec. 2003
Dirk Metzler
Post-Doc
Aug. 1999-Apr. 2000
Nicholas Grassly
Post-Doc
Aug. 1998-Aug. 1999

Munich :: 1991-1998

Gunter Weiss
PhD student
Jan. 1995-Nov. 1997
Coalescent analysis of nonrecombining DNA sequence data (PhD thesis)
Gangolf Jobb
Diploma student
Apr. 1998-Feb. 1999
Eine Maximum-Likelihood-Methode zum Aufspüren phylogenetischer Inhomogenitäten in molekularen Datensätzen (Master thesis)
Korbinian Strimmer
PhD student
Feb. 1995-Dec. 1997
Maximum likelihood methods in molecular phylogenetics (PhD thesis)
Ellen Baake
Post-Doc
Nov. 1996-Oct. 1998
Sonja Meyer
Diploma student
Jan. 1997-Oct. 1997
Auswertung einer Sammlung menschlicher mitochondrialer Sequenzen (Diploma thesis)
Roland Fleißner
Diploma student
Jan. 1997-Oct. 1997
RNA Sekundärstrukturen und die Rekonstruktion phylogenetischer Bäume (Diploma thesis)
Katja Nieselt-Struwe
Post-Doc
Jan. 1997-Jun. 1997
Johannes Schäfer
Post-Doc
Jan. 1997-Jun. 1997
Florian Burckhardt
Diploma student
Jun. 1996-Feb. 1997
Auswertung der Abundanzen ausgewählter Planktongruppen in parallel angesetzten Mikrokosmen mittels theoretischer Methoden (Diploma thesis)
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