Email: martin(DOT)fahrenberger(AT)meduniwien.ac.at
Phone: ++43 +1 / 4277 - 74330

Postal address:
Center for Integrative Bioinformatics Vienna (CIBIV)
Max Perutz Labs
Campus Vienna Biocenter 5 (VBC5)
A-1030 Wien, Austria

Research interests

• Algorithms and Software development
• scRNA-seq
• Data Analysis
• Machine Learning
• Cell Differentiation

Education

• May 2019 - present: Ph.D. in Bioinformatics, Center for Integrative Bioinformatics Vienna (CIBIV), Max Perutz Labs, Austria
  
• Oct 2015 - Mar 2019: M.Sc. in Computational Science, University of Regensburg, Germany
• Oct 2012 - Aug 2016: B.Sc. in Computational Science, University of Regensburg, Germany

Talks and Posters

2018

• Genome Science 2018, Nottingham, United Kingdom, 4.-6. September 2018:

Talk: “Exploring Spatial Transcriptomics: From tissue sections to gene expression patterns”

Publications

2024

• M. Fahrenberger, C. Esk, and A. von Haeseler (2024) GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator. bioRxiv, 2024.07.02.601501 (DOI: 10.1101/2024.07.02.601501)

2022

• C. Bangert, S. Villazala-Merino, M. Fahrenberger, T. Krausgruber, W.M. Bauer, V. Stanek, N.J. Campion, T. Bartosik, T. Quint, G. Regelsberger, V. Niederberger-Leppin, C. Bock, S. Schneider, and J. Eckl-Dorna (2022) Comprehensive Analysis of Nasal Polyps Reveals a More Pronounced Type 2 Transcriptomic Profile of Epithelial Cells and Mast Cells in Aspirin-Exacerbated Respiratory Disease. Front. Immunol., 13, 850494. (DOI: 10.3389/fimmu.2022.850494, PMID: 35418991, PMCID: PMC8996080)

2019

• A. Izquierdo, M. Fahrenberger, T. Persampieri, M.Q. Benedict, T. Giles, F. Catteruccia, R.D. Emes, T. Dottorini (2019) Evolution of gene expression levels in the male reproductive organs of Anopheles mosquitoes. Life Science Alliance, 2(1), e201800191 (DOI:10.26508/lsa.201800191)